PPDB

The Plant Proteome Database

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AT2G38810.1   histone H2A 8

Lab Annot. HTA8; DNA binding
Mapman: 28.1.3 DNA.synthesis/chromatin structure.histone
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G38810.3 11Arabidopsis thaliana1E-9313610010014 (14)C
AT2G38810.2 11Arabidopsis thaliana1E-9313610010014 (14)C
AT2G38810.4 11Arabidopsis thaliana1E-931361001000 (0)C
Os03g53190.2 7Oryza sativa4E-74137869261 (61)_
Os03g53190.1 7Oryza sativa4E-74137869261 (61)_
Os03g06670.1 7Oryza sativa1E-71138849061 (61)_
Zm00001eb004730_P001 agpv5Zea mays2E-7913886930 (0)_
GRMZM2G056231_P01 3.21Zea mays2E-791388693180 (176)_
v1_GRMZM2G056231_P01 4a53Zea mays2E-791388693217 (217)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CBFD_NFYB_HMF(1) Histone(1) Histone_H2A_C(1)
TargetP: Chloroplast (Class 4 C0.593; M0.202; S0.005; _0.242)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 136 aa (-cTP 83)
Molecular Weight 14.37 kDA(-cTP 8.83)
PI 10.48(-cTP 9.11)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1613Detail       Natural Senescence leaf [A. thaliana]  
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
19525416(leaf (wt and clpr4-1 mutant))
20706207(contaminants cell cycle interactome (cell culture))
20061580(chloroplast envelope (inner+outer))

Comparative Proteomics Data


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