PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G38740.1   Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Lab Annot. Haloacid dehalogenase-like hydrolase (HAD)
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G56500.2 11Arabidopsis thaliana8E-1221327490 (0)C
AT1G56500.1 11Arabidopsis thaliana8E-122132749395 (375)C
AT4G39970.1 11Arabidopsis thaliana7E-102262642424 (390)C
Os09g24230.1 7Oryza sativa3E-100233597810 (10)_
Os10g41930.2 7Oryza sativa4E-9923658787 (7)C
Os10g41930.1 7Oryza sativa1E-9823358787 (7)C
Zm00001eb379130_P001 agpv5Zea mays3E-10423760790 (0)_
v1_GRMZM2G475293_P01 4a53Zea mays3E-104237607915 (14)_
v1_GRMZM2G475293_P02 4a53Zea mays3E-104237607915 (14)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: HAD(1) HAD_2(1) Hydrolase(2) Hydrolase_6(1) Hydrolase_like(1) NIF(1)
TargetP: Cytoplasm (Class 2 C0.111; M0.057; S0.159; _0.852)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 244 aa (-cTP 229)
Molecular Weight 26.73 kDA(-cTP )
PI 4.84(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
622Detail       leaf [A. thaliana] total leaf tissue wild-type
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1445Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 1)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1450Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

17644812(plasma membrane - suspension cells)
19546170(mature pollen grains)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help