PPDB

The Plant Proteome Database

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AT2G38610.1   RNA-binding KH domain-containing protein

Lab Annot. KH domain-containing protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G38610.2 11Arabidopsis thaliana02861001005 (2)_
AT3G08620.1 11Arabidopsis thaliana3E-15728681890 (0)M
AT3G08620.2 11Arabidopsis thaliana4E-13624084900 (0)M
Os07g12490.1 7Oryza sativa6E-13828670820 (0)M
Os03g60110.1 7Oryza sativa2E-13628673820 (0)_
Os05g40290.1 7Oryza sativa1E-12428464760 (0)_
v1_GRMZM2G472052_P02 4a53Zea mays6E-142285738211 (11)M
GRMZM2G472052_P02 3.21Zea mays6E-142285738213 (5)M
Zm00001eb303680_P002 agpv5Zea mays6E-14228573820 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: KH_1(1) STAR_dimer(1)
TargetP: Cytoplasm (Class 5 C0.228; M0.210; S0.011; _0.345)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 286 aa (-cTP 271)
Molecular Weight 31.72 kDA(-cTP )
PI 8.99(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
2013Detail       leaf [A. thaliana] total leaf tissue wt

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help