PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G37860.1   reticulata-like protein%2C putative (DUF3411)
Lab Annot. LCD1 (LOWER CELL DENSITY 1) (reticulate family - RE)
Mapman: 33.99 development.unspecified
Curated Location envelope-inner (Pubmed: 23198870 23596191 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G37860.4 11Arabidopsis thaliana03471001000 (0)C
AT2G37860.3 11Arabidopsis thaliana034710010025 (25)C
AT2G37860.2 11Arabidopsis thaliana034710010023 (23)C
Os04g44290.1 7Oryza sativa2E-10320871840 (0)C
Os07g13590.1 7Oryza sativa8E-9420773850 (0)M
Os03g27340.1 7Oryza sativa1E-319164760 (0)_
v1_GRMZM2G133012_P01 4a53Zea mays8E-10320372830 (0)C
Zm00001eb076950_P003 agpv5Zea mays8E-10320372830 (0)C
GRMZM2G133012_P01 3.21Zea mays8E-10320372830 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: RETICULATA-like(1)
TargetP: Chloroplast (Class 4 C0.556; M0.033; S0.070; _0.290)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position:
Length 347 aa (-cTP 300)
Molecular Weight 37.35 kDA(-cTP 32.05)
PI 5.57(-cTP 4.93)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1577Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1613Detail       Natural Senescence leaf [A. thaliana]  
1617Detail        [A. thaliana] m48
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
1936Detail       leaf [A. thaliana] chloroplast Prep1_Prep2
1984Detail       leaf [A. thaliana] plastid wild-type
1985Detail       leaf [A. thaliana] plastid wild-type
1986Detail       leaf [A. thaliana] plastid Prep1_Prep2
1987Detail       leaf [A. thaliana] plastid Prep1_Prep2
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2013Detail       leaf [A. thaliana] total leaf tissue wt
2132Detail       leaf [A. thaliana] chloroplast fractionation MSH1

* For details about the exprimental sources click here.

Published Proteomics Data

 16618929(MITO/PLASTID-LOPIT-callus)
17432890(leaf total membranes)
18431481(chloroplast)
19995728(proplastid (Brassica napus))
19525416(leaf (wt and clpr4-1 mutant))
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help