PPDB

PPDB	The Plant Proteome Database

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AT2G37400.1 Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot.

DUF827 protein
Mapman: 35.1 not assigned.no ontology

Curated Location

plastid (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G53560.1 11 Arabidopsis thaliana 2E-149 338 66 78 203 (182) C
AT3G53560.2 11 Arabidopsis thaliana 4E-149 338 66 78 0 (0) M
AT5G02590.1 11 Arabidopsis thaliana 2E-97 332 49 68 3 (1) C
Os05g08930.1 7 Oryza sativa 5E-33 202 34 57 0 (0) C
Os02g45880.1 7 Oryza sativa 1E-09 61 39 65 0 (0) C
GRMZM5G847615_P01 3.21 Zea mays 1E-32 327 28 48 16 (16) C
Zm00001eb282930_P002 agpv5 Zea mays 1E-32 327 28 48 0 (0) C
v1_GRMZM2G089075_P01 4a53 Zea mays 1E-32 327 28 48 13 (13) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	BTAD(3) CotJB(1) CP12(1) DUF4919(2) HrpB1_HrpK(2) NARP1(2) PknG_TPR(2) PPR(2) RP
TargetP:	Chloroplast (Class 4 C0.503; M0.155; S0.000; _0.194)
Predotar:
Subcel. Location:	Lumen
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	333 aa (-cTP 264) (-lTP 242)
Molecular Weight	38.16 kDA(-cTP 30.56)(-lTP 28.33)
PI	6.70(-cTP 5.29)(-lTP 5.215)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

12938931(Total chloroplast envelope)
16618929(MITO/PLASTID-LOPIT-callus)
19995728(proplastid (Brassica napus))
19525416(leaf (wt and clpr4-1 mutant))
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21173025(root proteome)

Comparative Proteomics Data