PPDB

The Plant Proteome Database

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AT2G37040.1   PHE ammonia lyase 1

Lab Annot. PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase
Mapman: 16.2.1.1 secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G53260.1 11Arabidopsis thaliana0714909512 (1)_
AT3G10340.1 11Arabidopsis thaliana069381891 (1)_
AT5G04230.1 11Arabidopsis thaliana0695738326 (15)_
Os02g41650.3 7Oryza sativa0692768626 (26)_
Os02g41650.1 7Oryza sativa0692768626 (26)_
Os04g43800.1 7Oryza sativa069276870 (0)_
Zm00001eb077220_P001 agpv5Zea mays069276870 (0)_
v1_GRMZM2G118345_P01 4a53Zea mays069276877 (7)_
GRMZM2G118345_P01 3.21Zea mays069276877 (6)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Lyase_aromatic(1)
TargetP: Cytoplasm (Class 2 C0.070; M0.112; S0.062; _0.909)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 725 aa (-cTP 721)
Molecular Weight 78.73 kDA(-cTP )
PI 5.90(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2250Detail       seedlings [A. thaliana] total tissue atg5
2312Detail       leaf [A. thaliana] thylakoids thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19292762(Ubiquitin-affinity seedling (10 d))
21693672(wound-regulated leaf proteome (AOS mutant))
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help