PPDB

PPDB	The Plant Proteome Database

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AT2G36990.1 RNApolymerase sigma-subunit F

Lab Annot.

SIG6 sigma factor (SigF), also soldat8
Mapman: 27.2 RNA.transcription

Curated Location

plastid (Pubmed: 23198870 19273469 18431481 )

TAIR curated location: chloroplast10984613

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G08540.1 11 Arabidopsis thaliana 4E-77 359 39 59 0 (0) C
AT5G13730.1 11 Arabidopsis thaliana 4E-47 302 33 53 1 (1) C
AT3G53920.1 11 Arabidopsis thaliana 3E-44 294 28 58 0 (0) C
Os08g14450.1 7 Oryza sativa 3E-122 403 49 66 0 (0) C
Os03g16430.2 7 Oryza sativa 2E-68 328 36 59 0 (0) C
Os03g16430.1 7 Oryza sativa 1E-66 328 36 59 0 (0) M
v1_GRMZM2G144196_P02 4a53 Zea mays 7E-116 363 49 68 0 (0) C
GRMZM2G144196_P02 3.21 Zea mays 7E-116 363 49 68 0 (0) C
Zm00001eb210370_P007 agpv5 Zea mays 8E-116 363 49 68 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	HTH_28(3) LexA_DNA_bind(2) Sigma70_r2(1) Sigma70_r3(3) Sigma70_r4(2) Sigma70_r4_
TargetP:	Chloroplast (Class 1 C0.939; M0.108; S0.003; _0.042)
Predotar:
Subcel. Location:	Lumen
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	547 aa (-cTP 492) (-lTP 412)
Molecular Weight	61.80 kDA(-cTP 55.70)(-lTP 46.65)
PI	9.38(-cTP 9.25)(-lTP 9.527)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

19995723(chloroplast reference proteome)

Comparative Proteomics Data