PPDB

PPDB	The Plant Proteome Database

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AT2G34630.1 geranyl diphosphate synthase 1

Lab Annot.

COQ1/PRENYL DIPHOSPHATE SYNTHASE (SPS3) - needed for UBQ in mito (also plastid reported)
Mapman: 18.8 Co-factor and vitamine metabolism.ubiquinone

Curated Location

mitochondria (Pubmed: 21950843 )

TAIR curated location: plastid11069698

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G34630.2 11 Arabidopsis thaliana 0 321 100 100 0 (0) M
AT1G17050.1 11 Arabidopsis thaliana 2E-68 297 40 63 207 (130) C
AT1G78510.2 11 Arabidopsis thaliana 1E-65 297 39 62 22 (5) M
Os06g46450.1 7 Oryza sativa 2E-171 321 73 86 8 (8) M
Os06g46450.2 7 Oryza sativa 3E-171 321 73 86 4 (4) M
Os08g09370.1 7 Oryza sativa 2E-133 335 60 75 0 (0) M
GRMZM2G014508_P01 3.21 Zea mays 1E-174 321 74 87 1 (1) M
Zm00001eb224620_P002 agpv5 Zea mays 1E-174 321 74 87 0 (0) M
Zm00001eb224620_P001 agpv5 Zea mays 1E-174 321 74 87 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	polyprenyl_synt(1)
TargetP:	Cytoplasm (Class 5 C0.091; M0.279; S0.100; _0.284)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	321 aa (-cTP 287)
Molecular Weight	35.05 kDA(-cTP )
PI	5.63(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1395	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
2254	Detail								leaf [A. thaliana]	total seedlings	gfs9
2256	Detail								leaf [A. thaliana]	total seedlings	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

21311031(mitochondria)
21841088(mitochondria (2DE native gel))
21173025(root proteome)

Comparative Proteomics Data