PPDB

The Plant Proteome Database

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AT2G34630.1   geranyl diphosphate synthase 1

Lab Annot. COQ1/PRENYL DIPHOSPHATE SYNTHASE (SPS3) - needed for UBQ in mito (also plastid reported)
Mapman: 18.8 Co-factor and vitamine metabolism.ubiquinone
Curated Location mitochondria (Pubmed: 21950843 )

TAIR curated location: plastid11069698
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G34630.2 11Arabidopsis thaliana03211001000 (0)M
AT1G17050.1 11Arabidopsis thaliana2E-682974063185 (140)C
AT1G78510.2 11Arabidopsis thaliana1E-65297396214 (5)M
Os06g46450.1 7Oryza sativa2E-17132173868 (8)M
Os06g46450.2 7Oryza sativa3E-17132173864 (4)M
Os08g09370.1 7Oryza sativa2E-13333560750 (0)M
GRMZM2G014508_P01 3.21Zea mays1E-17432174871 (1)M
Zm00001eb224620_P002 agpv5Zea mays1E-17432174870 (0)M
Zm00001eb224620_P001 agpv5Zea mays1E-17432174870 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: polyprenyl_synt(1)
TargetP: Cytoplasm (Class 5 C0.091; M0.279; S0.100; _0.284)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 321 aa (-cTP 287)
Molecular Weight 35.05 kDA(-cTP )
PI 5.63(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
2254Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

21311031(mitochondria)
21841088(mitochondria (2DE native gel))
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help