PPDB

 The Plant Proteome Database

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AT2G34250.1   SecY protein transport family protein
Lab Annot. protein transport protein sec61, putative
Mapman: 29.3.4.99 protein.targeting.secretory pathway.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G34250.3 11Arabidopsis thaliana04751001000 (0)M
AT2G34250.2 11Arabidopsis thaliana047510010030 (22)M
AT1G29310.2 11Arabidopsis thaliana0475991000 (0)M
Os03g11440.1 7Oryza sativa0475919725 (25)M
Os09g17830.1 7Oryza sativa048589951 (1)M
Os09g17840.1 7Oryza sativa048589951 (1)M
Zm00001eb008550_P001 agpv5Zea mays047592970 (0)M
v1_GRMZM2G130987_P03 4a53Zea mays0475929725 (24)M
v1_GRMZM2G130987_P02 4a53Zea mays0475929725 (24)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Plug_translocon(2) SecY(1)
TargetP: Mitochondria (Class 5 C0.003; M0.714; S0.113; _0.514)
Predotar:
Subcel. Location:
TM-HMM prediction: 10 TMs
Aramemnon: 10 TMs
TAT position:
Length 475 aa (-cTP 404)
Molecular Weight 52.10 kDA(-cTP )
PI 9.12(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1539Detail       leaf [A. thaliana] wild-type
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2268Detail       seedlings [A. thaliana] total tissue wild-type
2269Detail       seedlings [A. thaliana] total tissue wild-type
2270Detail       seedlings [A. thaliana] total tissue wild-type
2271Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 17660356(tonoplast (Brassica oleracea buds))
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help