PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G33530.1   serine carboxypeptidase-like 46

Lab Annot. SCPL46 (serine carboxypeptidase-like 46)
Mapman: 29.5.5.5.1* protein.degradation.serine protease.SC.S10
Curated Location
TAIR curated location: cell wall (sensu Magnoliophyta)16287169
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G28110.2 11Arabidopsis thaliana046583927 (1)S
AT1G28110.1 11Arabidopsis thaliana046583927 (1)S
AT1G43780.1 11Arabidopsis thaliana9E-15444050680 (0)S
Os11g31980.1 7Oryza sativa046367852 (2)S
Os04g32540.1 7Oryza sativa043770826 (6)S
Os04g32540.2 7Oryza sativa7E-17734769826 (6)_
Zm00001eb084910_P004 agpv5Zea mays045467810 (0)S
GRMZM2G123940_P02 3.21Zea mays045467813 (2)S
v1_GRMZM2G123940_P05 4a53Zea mays045367813 (3)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: LIP(1) Peptidase_S10(1)
TargetP: Secreted (Class 4 C0.008; M0.318; S0.679; _0.013)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 465 aa (-cTP 441)
Molecular Weight 51.88 kDA(-cTP )
PI 8.66(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1113Detail        [A. thaliana] control for RARE-1 co-IP wild-type
1114Detail        [A. thaliana] RARE1 co-IP rare-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

WallDB-E.Jamet(cell wall reference proteome)
21533090(plasmodesmata-crude)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help