PPDB

PPDB	The Plant Proteome Database

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AT2G33410.1 RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot.

heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative
Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G14300.2 11 Arabidopsis thaliana 2E-115 368 60 70 0 (0) _
AT4G14300.1 11 Arabidopsis thaliana 2E-115 368 60 70 7 (7) _
AT5G55550.5 11 Arabidopsis thaliana 2E-77 192 58 77 0 (0) _
Os11g41890.1 7 Oryza sativa 3E-75 262 49 66 10 (10) _
Os07g39560.3 7 Oryza sativa 1E-72 196 56 72 0 (0) _
Os07g39560.1 7 Oryza sativa 1E-72 196 56 72 0 (0) _
AC198361.3_FGP004 3.21 Zea mays 2E-86 311 53 63 11 (11) _
v1_AC198361.3_FGP004 4a53 Zea mays 2E-86 311 53 63 9 (9) _
Zm00001eb046160_P001 agpv5 Zea mays 2E-86 311 53 63 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Nup35_RRM_2(2) OB_RNB(2) PHM7_cyt(3) RRM_1(2) RRM_7(2)
TargetP:	Cytoplasm (Class 2 C0.080; M0.144; S0.048; _0.921)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	404 aa (-cTP 325)
Molecular Weight	41.33 kDA(-cTP )
PI	6.08(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
351	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
1409	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1532	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	clps (rep. 1)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

15815986(Leaf)
19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19672695(oligo(dT) mRNA-binding proteins (cell culture))
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)

Comparative Proteomics Data