PPDB

PPDB	The Plant Proteome Database

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AT2G33160.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G43080.1 11 Arabidopsis thaliana 6E-174 395 60 76 0 (0) S
AT1G78400.1 11 Arabidopsis thaliana 2E-170 373 63 79 0 (0) S
AT1G43090.1 11 Arabidopsis thaliana 4E-170 389 61 76 0 (0) S
Os06g35320.1 7 Oryza sativa 8E-101 412 40 58 0 (0) S
Os06g35370.1 7 Oryza sativa 8E-101 412 40 58 0 (0) S
Os02g10300.1 7 Oryza sativa 7E-97 368 42 59 0 (0) S
GRMZM2G153666_P02 3.21 Zea mays 1E-104 376 42 63 0 (0) S
Zm00001eb275910_P001 agpv5 Zea mays 1E-104 376 42 63 0 (0) S
v1_GRMZM2G153666_P02 4a53 Zea mays 1E-104 376 42 63 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(2) Glyco_hydro_28(1) Pectate_lyase_3(2) RVT_3(1)
TargetP:	Secreted (Class 1 C0.007; M0.100; S0.963; _0.063)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	664 aa (-cTP 586)
Molecular Weight	74.97 kDA(-cTP )
PI	8.79(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

18796151(cell wall (hypocotyl))
WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data