PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G32810.1   beta galactosidase 9
Lab Annot. beta-galactosidase 9 (BGAL9)
Mapman: 10.6.2 cell wall.degradation.mannan-xylose-arabinose-fucose
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G32810.2 11Arabidopsis thaliana0842999941 (9)S
AT2G28470.3 11Arabidopsis thaliana085055680 (0)S
AT2G28470.1 11Arabidopsis thaliana08505568111 (62)S
Os12g24170.1 7Oryza sativa086464767 (7)S
Os03g15020.1 7Oryza sativa084752684 (4)_
Os03g15020.2 7Oryza sativa081651674 (4)_
Zm00001eb139130_P001 agpv5Zea mays085763760 (0)M
Zm00001eb139130_P002 agpv5Zea mays085763760 (0)M
GRMZM2G073584_P02 3.21Zea mays085763766 (6)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: BetaGal_dom4_5(2) Gal_Lectin(1) GHD(1) Glyco_hydro_35(1) Glyco_hydro_42(1)
TargetP: Secreted (Class 2 C0.003; M0.143; S0.936; _0.066)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 887 aa (-cTP 836)
Molecular Weight 99.20 kDA(-cTP )
PI 8.29(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1202Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1207Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1619Detail        [A. thaliana] m48
1620Detail        [A. thaliana] m48
1621Detail        [A. thaliana] m48
1622Detail        [A. thaliana] m48
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 15215502(Vacuolar proteome)
15539469(vacuole)
17151019(vacuole - suspension cell)
17526915(glycoproteome cell wall (stems))
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
WallDB-E.Jamet(cell wall reference proteome)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21988472(vacuole (unfiltered data))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help