PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G32640.1   Lycopene beta/epsilon cyclase protein
Lab Annot. lycopene cyclase (LCYB)
Mapman: 16.1.4.5 secondary metabolism.isoprenoids.carotenoids.lycopene beta cyclase
Curated Location thylakoid (Pubmed: 23198870 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G32640.2 11Arabidopsis thaliana03821001008 (7)C
Os08g32630.1 7Oryza sativa0545688210 (10)C
Os08g32630.3 7Oryza sativa0486688210 (10)C
Os08g32630.5 7Oryza sativa043970842 (2)_
GRMZM5G851815_P02 3.21Zea mays0544678222 (22)M
Zm00001eb179140_P001 agpv5Zea mays3E-13626771830 (0)M
GRMZM5G851815_P01 3.21Zea mays3E-136267718310 (10)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: 3HCDH_N(1) DAO(2) FAD_binding_3(2) Lycopene_cycl(1) Pyr_redox(1) Pyr_redox_2(1)
TargetP: Chloroplast (Class 3 C0.723; M0.317; S0.065; _0.024)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon: 2 TMs
TAT position:
Length 585 aa (-cTP 567)
Molecular Weight 64.61 kDA(-cTP 62.58)
PI 5.76(-cTP 5.55)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
875Detail       leaf [A. thaliana] chloroplast stromawild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1625Detail       Rosettes [A. thaliana] Wild-type
1675Detail       Rosettes [A. thaliana]  
1676Detail       Rosettes [A. thaliana]  
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1832Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help