PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G32480.1   chloroplastic membrane metallo proteases
Lab Annot. membrane zinc metalloprotease (M50) (AraSP)
Mapman: 29.5.7.10.1* protein.degradation.metalloprotease.MM.M50
Curated Location envelope-inner (Pubmed: 23198870 16413549 18431481 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G32480.2 11Arabidopsis thaliana0447919113 (12)C
AT1G05140.1 11Arabidopsis thaliana0450808716 (16)C
Os03g38230.1 7Oryza sativa5E-150394587424 (24)C
Os07g48440.1 7Oryza sativa4E-177356730 (0)_
Os02g32960.1 7Oryza sativa2E-107757750 (0)_
Zm00001eb219720_P001 agpv5Zea mays6E-14942556720 (0)C
v1_GRMZM2G062470_P01 4a53Zea mays6E-149425567250 (50)C
GRMZM2G062470_P01 3.21Zea mays6E-149425567260 (60)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: PDZ(1) PDZ_2(1) PDZ_6(1) Peptidase_M50(1) Peptidase_M50B(1)
TargetP: Chloroplast (Class 1 C0.964; M0.033; S0.018; _0.085)
Predotar:
Subcel. Location: Thylakoid membrane
TM-HMM prediction: 3 TMs
Aramemnon: 4 TMs
TAT position:
Length 447 aa (-cTP 374) (-lTP 354)
Molecular Weight 48.73 kDA(-cTP 40.08)(-lTP 38.06)
PI 8.59(-cTP 5.17)(-lTP 5.400)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
875Detail       leaf [A. thaliana] chloroplast stromawild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1830Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1983Detail       leaf [A. thaliana] plastid wild-type
1984Detail       leaf [A. thaliana] plastid wild-type
1985Detail       leaf [A. thaliana] plastid wild-type
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
18436743(specific to leaves)
19995723(chloroplast reference proteome)
22060019(phosphoproteome - N-starved seedlings)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help