PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G31710.1   Vacuolar ATPase assembly integral membrane protein VMA21-like domain-containing protein

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G05780.1 11Arabidopsis thaliana1E-6010683920 (0)S
Os04g52300.1 7Oryza sativa5E-299950690 (0)S
v1_GRMZM2G345624_P02 4a53Zea mays9E-279947690 (0)S
Zm00001eb071020_P001 agpv5Zea mays9E-279947690 (0)S
GRMZM2G028676_P01 3.21Zea mays3E-249946650 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DAP10(1) DUF485(1) Ndc1_Nup(1) UPF0242(1) VMA21(1)
TargetP: Secreted (Class 1 C0.004; M0.015; S0.983; _0.058)
Predotar:
Subcel. Location:
TM-HMM prediction: 2 TMs
Aramemnon: 1 TMs
TAT position:
Length 105 aa (-cTP 42)
Molecular Weight 11.37 kDA(-cTP )
PI 7.87(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

19334764(plasma membrane (cell culture))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help