PPDB

 The Plant Proteome Database

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AT2G30620.1   winged-helix DNA-binding transcription factor family protein
Lab Annot. histone H1.2
Mapman: 28.1.3 DNA.synthesis/chromatin structure.histone
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G30620.2 11Arabidopsis thaliana3E-106273727229 (18)_
AT1G06760.1 11Arabidopsis thaliana2E-3412869751 (1)_
AT2G18050.1 11Arabidopsis thaliana2E-187159770 (0)_
Os03g58470.1 7Oryza sativa2E-2476647817 (17)_
Os04g18090.1 7Oryza sativa2E-207357730 (0)C
Os07g08710.1 7Oryza sativa1E-197758685 (5)_
Zm00001eb212840_P003 agpv5Zea mays6E-247265770 (0)_
GRMZM2G003002_P02 3.21Zea mays6E-2472657710 (10)_
v1_GRMZM2G003002_P02 4a53Zea mays6E-2472657733 (33)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Linker_histone(2)
TargetP: Cytoplasm (Class 3 C0.375; M0.063; S0.031; _0.837)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 273 aa (-cTP 224)
Molecular Weight 28.49 kDA(-cTP )
PI 10.83(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1614Detail       Natural Senescence leaf [A. thaliana]  
1617Detail        [A. thaliana] m48
1619Detail        [A. thaliana] m48
1620Detail        [A. thaliana] m48
1627Detail       Rosettes [A. thaliana] total leaf tissue thylakoid + envelopeWild-type
1628Detail       Rosettes [A. thaliana] total leaf tissue thylakoid + envelopek1xk3
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 15496452(nucleolus)
19376835(leaf phosphoproteins)
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help