PPDB

The Plant Proteome Database

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AT2G30570.1   photosystem II reaction center W

Lab Annot. psbW - 'LTP' but spontaneous
Mapman: 1.1.1.2 PS.lightreaction.photosystem II.PSII polypeptide subunits
Curated Location thylakoid-integral (Pubmed: 23198870 18431481 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os01g56680.2 7Oryza sativa2E-1711955630 (0)M
Os01g56680.1 7Oryza sativa1E-1610362670 (0)C
Os05g43310.1 7Oryza sativa1E-1510549650 (0)C
Zm00001eb151750_P001 agpv5Zea mays2E-2313052620 (0)C
AC190623.3_FGP001 3.21Zea mays2E-2313052620 (0)C
Zm00001eb352880_P002 agpv5Zea mays1E-2210855670 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: PsbW(1)
TargetP: Chloroplast (Class 3 C0.659; M0.071; S0.088; _0.047)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position:
Length 133 aa (-cTP 89) (-lTP 54)
Molecular Weight 13.68 kDA(-cTP 9.35)(-lTP 6.03)
PI 5.29(-cTP 3.89)(-lTP 5.629)

Experimental Evidence

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View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
44Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type

* For details about the exprimental sources click here.

Published Proteomics Data

14729914(thylakoid stripped)
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data


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