PPDB

The Plant Proteome Database

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AT2G30100.1   pentatricopeptide (PPR) repeat-containing protein

Lab Annot. very weak - Pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G04810.1 11Arabidopsis thaliana3E-12363224444 (39)C
AT3G49730.1 11Arabidopsis thaliana1E-0621423432 (2)M
Os05g28500.1 7Oryza sativa1E-15339954730 (0)C
Os04g40130.1 7Oryza sativa1E-0935222430 (0)S
Os04g38930.1 7Oryza sativa1E-0732825430 (0)M
GRMZM2G084719_P01 3.21Zea mays4E-15042552700 (0)C
Zm00001eb286480_P001 agpv5Zea mays4E-15042552700 (0)C
v1_GRMZM2G084719_P01 4a53Zea mays4E-15042552700 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: MA3(3) PPR(4) PPR_2(4) PPR_3(4) PPR_long(3)
TargetP: Chloroplast (Class 3 C0.773; M0.338; S0.025; _0.014)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 503 aa (-cTP 453)
Molecular Weight 57.55 kDA(-cTP 51.77)
PI 5.86(-cTP 5.14)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1385Detail        [A. thaliana] chloroplast fractionation  
2306Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

21173025(root proteome)

Comparative Proteomics Data


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