PPDB

PPDB	The Plant Proteome Database

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AT2G30050.1 transducin family protein / WD-40 repeat family protein

Lab Annot.

Nucleoporin Sec13
Mapman: 29.3.1 protein.targeting.nucleus

Curated Location

nucleus (Pubmed: 21189294 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G01340.1 11 Arabidopsis thaliana 0 302 89 95 78 (40) _
AT3G01340.2 11 Arabidopsis thaliana 0 302 89 95 78 (40) _
AT5G67320.1 11 Arabidopsis thaliana 7E-12 289 27 42 0 (0) S
Os02g04320.1 7 Oryza sativa 7E-179 305 79 89 8 (8) _
Os02g04320.2 7 Oryza sativa 7E-179 305 79 89 8 (8) _
Os07g14280.1 7 Oryza sativa 2E-147 303 67 80 18 (18) _
GRMZM2G007021_P02 3.21 Zea mays 6E-178 306 78 88 3 (3) _
GRMZM2G007021_P01 3.21 Zea mays 6E-178 306 78 88 3 (3) _
Zm00001eb338610_P003 agpv5 Zea mays 6E-178 306 78 88 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ANAPC4_WD40(4) Ge1_WD40(3) IKI3(2) WD40(6) WD40_2(2)
TargetP:	Cytoplasm (Class 1 C0.096; M0.081; S0.079; _0.944)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	302 aa (-cTP 227)
Molecular Weight	32.64 kDA(-cTP )
PI	5.41(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1530	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	wild-type (rep. 1)
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2018	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2247	Detail								seedlings [A. thaliana]	total tissue	atg5
2251	Detail								seedlings [A. thaliana]	total tissue	wild-type
2262	Detail								leaf [A. thaliana]	stroma Clp	Clp C1 wild-type
2290	Detail								[A. thaliana]		Clp C1 TRAP
2320	Detail								[A. thaliana]	Thylakoids plastoglobule

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19508356(mature pollen grains and pollen tubes)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data