PPDB

The Plant Proteome Database

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AT2G29960.1   cyclophilin 5

Lab Annot. peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP5) - dually targeted to ER & cytosol
Mapman: 31.3.1 cell.cycle.peptidylprolyl isomerase
Curated Location cytosol (Pubmed: 10189705 10715320 )
ER (Pubmed: 10189705 10715320 )

TAIR curated location: cytosol & membrane fraction10715321
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G29960.3 11Arabidopsis thaliana3E-1462011001000 (0)S
AT2G29960.2 11Arabidopsis thaliana1E-135201959526 (22)S
AT5G58710.1 11Arabidopsis thaliana1E-119185869496 (42)S
Os06g49480.2 7Oryza sativa3E-115204788735 (35)M
Os06g49480.1 7Oryza sativa1E-113209768535 (35)M
Os06g49470.1 7Oryza sativa2E-9318070850 (0)S
Zm00001eb227460_P003 agpv5Zea mays2E-11417986940 (0)M
v1_GRMZM2G084521_P03 4a53Zea mays2E-114179869447 (45)M
GRMZM2G084521_P03 3.21Zea mays2E-114179869446 (46)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Pro_isomerase(1)
TargetP: Secreted (Class 1 C0.009; M0.046; S0.981; _0.126)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 201 aa (-cTP 181)
Molecular Weight 21.53 kDA(-cTP )
PI 9.06(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1542Detail       leaf [A. thaliana] wild-type
1651Detail       leaf [A. thaliana] plastoglobules plastoglobulewild-type
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2029Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48

* For details about the exprimental sources click here.

Published Proteomics Data

16618929(ER-LOPIT-callus)
18931141(peroxisomes- high&low purity (cell culture))
18931141(peroxisomes-high purity (cell culture))
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)
22430844(Golgi-cell-culture)

Comparative Proteomics Data


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