PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G29050.2   RHOMBOID-like 1
Lab Annot. rhomboid protease 1 (AtRBL1)
Mapman: 29.5.5.10* protein.degradation.serine protease ST.S54
Curated Location golgi (Pubmed: 16223493 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G29050.1 11Arabidopsis thaliana033891910 (0)_
AT3G53780.3 11Arabidopsis thaliana2E-11331255690 (0)_
AT3G53780.2 11Arabidopsis thaliana7E-11331454690 (0)_
Os11g47840.1 7Oryza sativa3E-12129160730 (0)_
Os09g35730.1 7Oryza sativa9E-115302567249 (49)_
Os08g43320.1 7Oryza sativa1E-110301547224 (24)_
Zm00001eb124440_P002 agpv5Zea mays2E-11230257680 (0)_
Zm00001eb124440_P001 agpv5Zea mays2E-11230257680 (0)_
Zm00001eb124440_P003 agpv5Zea mays2E-11230257680 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DER1(2) Rhomboid(2)
TargetP: Cytoplasm (Class 3 C0.156; M0.158; S0.005; _0.731)
Predotar:
Subcel. Location:
TM-HMM prediction: 7 TMs
Aramemnon: 7 TMs
TAT position:
Length 346 aa (-cTP 286)
Molecular Weight 38.40 kDA(-cTP )
PI 10.16(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 21311031(chloroplasts)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help