PPDB

 The Plant Proteome Database

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AT2G28800.1   63 kDa inner membrane family protein
Lab Annot. Alb3 (Albino 3)
Mapman: 29.3.3 protein.targeting.chloroplast
Curated Location thylakoid-integral (Pubmed: 23198870 18431481 )

TAIR curated location: thylakoid membrane (sensu Viridiplantae) & chloroplast15322131,16595657,9165749,10636840
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G28800.4 11Arabidopsis thaliana04629393100 (83)C
AT2G28800.2 11Arabidopsis thaliana0341999940 (39)C
AT2G28800.3 11Arabidopsis thaliana0341999940 (39)C
Os01g05800.1 7Oryza sativa0309829130 (30)C
Os01g05800.2 7Oryza sativa0309829130 (30)C
Os03g62750.4 7Oryza sativa7E-16039458732 (2)M
v1_GRMZM2G153363_P01 4a53Zea mays034177878 (8)C
Zm00001eb124300_P001 agpv5Zea mays034177870 (0)C
GRMZM5G839422_P01 3.21Zea mays0341778742 (42)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: 60KD_IMP(1) Cytochrom_C_asm(2) DUF2062(2) DUF5524(1) LAP1C(2)
TargetP: Chloroplast (Class 2 C0.919; M0.193; S0.008; _0.013)
Predotar:
Subcel. Location: Thylakoid membrane
TM-HMM prediction: 4 TMs
Aramemnon: 4 TMs
TAT position:
Length 462 aa (-cTP 407) (-lTP 372)
Molecular Weight 50.24 kDA(-cTP 44.46)(-lTP 40.69)
PI 9.08(-cTP 7.05)(-lTP 8.881)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
105Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
738Detail        [A. thaliana]  
1043Detail       leaf [A. thaliana] plastid - coIP thylakoid membrane 
1393Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1577Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1578Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1583Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1625Detail       Rosettes [A. thaliana] Wild-type
1626Detail       Rosettes [A. thaliana] k1xk3
1641Detail       leaf [A. thaliana] total tissue shoot1 mutant
1643Detail       leaf [A. thaliana] total leaf tissue Wild-type
1707Detail        [A. thaliana] sht1
1708Detail        [A. thaliana] Wild-type
1715Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek5-1
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
1830Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1831Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Normal light
1832Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1833Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1984Detail       leaf [A. thaliana] plastid wild-type
1985Detail       leaf [A. thaliana] plastid wild-type
1986Detail       leaf [A. thaliana] plastid Prep1_Prep2
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2132Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2312Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 15322131(Thylakoid-stripped)
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
19995723(chloroplast reference proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

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