PPDB

The Plant Proteome Database

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AT2G28490.1   RmlC-like cupins superfamily protein

Lab Annot. RmlC-like cupins protein
Mapman: 33.1 development.storage proteins
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G18540.1 11Arabidopsis thaliana5E-4539332504 (3)S
AT2G18540.2 11Arabidopsis thaliana6E-4539332500 (0)S
AT4G36700.1 11Arabidopsis thaliana4E-38398304830 (22)S
Os03g21790.1 7Oryza sativa1E-11746645610 (0)M
Os03g10110.1 7Oryza sativa1E-3241827440 (0)_
Os03g46100.1 7Oryza sativa3E-2646323400 (0)S
Zm00001eb016090_P002 agpv5Zea mays5E-12944846630 (0)S
Zm00001eb016090_P001 agpv5Zea mays5E-12944846630 (0)S
GRMZM2G054916_P01 3.21Zea mays6E-10544941570 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Cupin_1(2) Cupin_2(2)
TargetP: Secreted (Class 1 C0.007; M0.072; S0.959; _0.065)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 511 aa (-cTP 487)
Molecular Weight 55.70 kDA(-cTP )
PI 5.83(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1393Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2268Detail       seedlings [A. thaliana] total tissue wild-type
2269Detail       seedlings [A. thaliana] total tissue wild-type
2273Detail       seedlings [A. thaliana] total tissue wild-type
2291Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

11402211,12068122,15047896,16679420,17028149(seed-all-Jobpapers)
17293592(total seedlings û light and dark grown)
18599647(seed proteome)
18796151(cell wall (hypocotyl))
20702726(mature seeds)
WallDB-E.Jamet(cell wall reference proteome)
21533090(plasmodesmata-crude)
21109274(cellwall-glycoproteome)

Comparative Proteomics Data


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