PPDB

The Plant Proteome Database

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AT2G27840.1   histone deacetylase-related / HD-like protein

Lab Annot.
Mapman: 27.3.55 RNA.regulation of transcription.HDA
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G27840.4 11Arabidopsis thaliana3E-8412397970 (0)_
AT2G27840.3 11Arabidopsis thaliana5E-8412496960 (0)_
AT2G27840.2 11Arabidopsis thaliana7E-6610296960 (0)_
Os05g51830.1 7Oryza sativa1E-15112425713 (13)_
Os01g68104.1 7Oryza sativa3E-0812532480 (0)_
Zm00001eb365100_P001 agpv5Zea mays4E-1811842550 (0)_
GRMZM5G898314_P01 3.21Zea mays2E-1711840552 (2)_
GRMZM5G898314_P02 3.21Zea mays2E-1711840552 (2)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: NPL(1)
TargetP: Cytoplasm (Class 2 C0.054; M0.109; S0.190; _0.901)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 144 aa (-cTP 119)
Molecular Weight 16.63 kDA(-cTP )
PI 4.41(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data


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