PPDB

 The Plant Proteome Database

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AT2G27820.1   prephenate dehydratase 1
Lab Annot. arogenate dehydratase/ prephenate dehydratase (ADT3)
Mapman: 13.1.6.3.1 amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase
Curated Location plastid stroma (Pubmed: 23198870 19136569 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G08250.1 11Arabidopsis thaliana0380859016 (5)C
AT3G44720.1 11Arabidopsis thaliana0422688077 (11)C
AT5G22630.1 11Arabidopsis thaliana0416708033 (9)C
Os04g33390.1 7Oryza sativa039372810 (0)C
Os09g39260.1 7Oryza sativa036077852 (2)C
Os09g39230.1 7Oryza sativa037474842 (2)C
v1_GRMZM2G466543_P01 4a53Zea mays0419717917 (17)M
Zm00001eb096110_P001 agpv5Zea mays041971790 (0)M
GRMZM2G466543_P01 3.21Zea mays0419717916 (16)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ACT(2) PDT(1)
TargetP: Chloroplast (Class 4 C0.724; M0.415; S0.000; _0.030)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 424 aa (-cTP 400)
Molecular Weight 46.10 kDA(-cTP 43.40)
PI 6.46(-cTP 5.91)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1176Detail       leaf [A. thaliana] co-IP ClpR2 stromawild-type
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2302Detail        [A. thaliana] Clp C1 WT
2303Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP
2320Detail        [A. thaliana] Thylakoids plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

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