PPDB

PPDB	The Plant Proteome Database

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AT2G27170.1 Structural maintenance of chromosomes (SMC) family protein

Lab Annot.

Structural maintenance of chromosomes (SMC) protein
Mapman: 31.2 cell.division

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G27170.2 11 Arabidopsis thaliana 0 1204 100 100 19 (6) _
AT2G27170.4 11 Arabidopsis thaliana 0 1051 100 100 0 (0) _
AT2G27170.3 11 Arabidopsis thaliana 0 1051 100 100 0 (0) _
Os02g04050.1 7 Oryza sativa 0 697 60 77 0 (0) _
Os02g04080.1 7 Oryza sativa 0 858 51 71 0 (0) M
Os02g04040.1 7 Oryza sativa 0 494 64 80 11 (11) _
Zm00001eb297550_P001 agpv5 Zea mays 0 1204 62 78 0 (0) _
GRMZM2G456570_P01 3.21 Zea mays 0 1201 62 78 19 (8) S
v1_GRMZM2G456570_P01 4a53 Zea mays 0 1201 62 78 25 (25) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA_15(2) AAA_21(2) AAA_23(2) AAA_29(1) ABC_tran(2) SMC_hinge(1) SMC_N(1)
TargetP:	Cytoplasm (Class 3 C0.090; M0.030; S0.211; _0.713)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1204 aa (-cTP 1176)
Molecular Weight	139.37 kDA(-cTP )
PI	6.05(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
2287	Detail								[A. thaliana]		Clp C1 WT
2290	Detail								[A. thaliana]		Clp C1 TRAP
2297	Detail								[A. thaliana]		Clp C1 WT
2299	Detail								[A. thaliana]		Clp C1 TRAP
2303	Detail								[A. thaliana]		Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data