PPDB

The Plant Proteome Database

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AT2G27100.1   C2H2 zinc-finger protein SERRATE (SE)

Lab Annot. SE (SERRATE); transcription factor
Mapman: 27.3.11 RNA.regulation of transcription.C2H2 zinc finger family
Curated Location not plastid
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os06g48530.1 7Oryza sativa063258700 (0)_
Os08g40560.1 7Oryza sativa0615577010 (10)C
Os08g40560.2 7Oryza sativa0615577010 (10)C
Zm00001eb273040_P001 agpv5Zea mays063459710 (0)C
GRMZM2G156099_P01 3.21Zea mays063459710 (0)C
v1_GRMZM2G156099_P02 4a53Zea mays0634597114 (14)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ARS2(1) PHINT_rpt(2) SERRATE_Ars2_N(1) Toxin-deaminase(1)
TargetP: Chloroplast (Class 5 C0.739; M0.024; S0.006; _0.610)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 720 aa (-cTP 689)
Molecular Weight 81.10 kDA(-cTP 77.90)
PI 8.41(-cTP 8.72)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1582Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
2248Detail       seedlings [A. thaliana] total tissue wild-type
2299Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
15496452(nucleolus)
18463617(suspension cells-phosphorylated proteins)
19200160(flower-stage 12)
19546170(mature pollen grains)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19525416(leaf (wt and clpr4-1 mutant))
19253305(phosphoproteins (etiolated seedling))
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)
21433285(purified Plasma membrane -cell_cultures)
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help