PPDB

The Plant Proteome Database

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AT2G25950.1   PITH domain protein (DUF1000)

Lab Annot. unknown function (DUF1000) thioredoxin family Trp26?
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G25950.2 11Arabidopsis thaliana6E-1431911001000 (0)_
AT3G04780.1 11Arabidopsis thaliana4E-11158325023 (19)_
Os01g37832.1 7Oryza sativa8E-125204799013 (13)_
Os01g37832.2 7Oryza sativa1E-116191799013 (13)_
Os01g37832.3 7Oryza sativa3E-6410982910 (0)_
v1_GRMZM2G090647_P03 4a53Zea mays1E-122204778816 (16)_
v1_GRMZM2G090647_P02 4a53Zea mays1E-122204778816 (16)_
Zm00001eb162230_P001 agpv5Zea mays1E-12220477880 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: PITH(1)
TargetP: Cytoplasm (Class 2 C0.243; M0.078; S0.029; _0.877)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 204 aa (-cTP 167)
Molecular Weight 22.69 kDA(-cTP )
PI 5.09(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
622Detail       leaf [A. thaliana] total leaf tissue wild-type
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
17216043(leaf)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help