PPDB

 The Plant Proteome Database

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AT2G25910.1   3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein
Lab Annot. 3'-5' exonuclease domain-containing protein
Mapman: 28.99 DNA.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G25910.2 11Arabidopsis thaliana034299996 (3)C
AT2G25920.1 11Arabidopsis thaliana2E-093873810 (0)C
AT1G54440.3 11Arabidopsis thaliana1E-0615427450 (0)_
Os01g38620.1 7Oryza sativa5E-16730870860 (0)_
Os01g38620.2 7Oryza sativa5E-16730870860 (0)_
Os01g38620.3 7Oryza sativa2E-10320768850 (0)_
GRMZM2G081924_P01 3.21Zea mays1E-16135064790 (0)_
v1_GRMZM2G081924_P01 4a53Zea mays1E-16135064790 (0)_
Zm00001eb159970_P001 agpv5Zea mays7E-16131369840 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DNA_pol_A_exo1(1) KH_1(1) KH_2(1) KH_4(1)
TargetP: Chloroplast (Class 5 C0.583; M0.084; S0.081; _0.553)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 341 aa (-cTP 317)
Molecular Weight 38.39 kDA(-cTP 35.99)
PI 5.53(-cTP 5.44)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2287Detail        [A. thaliana] Clp C1 WT
2290Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help