PPDB

The Plant Proteome Database

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AT2G25730.1   zinc finger FYVE domain protein

Lab Annot. Tetratricopeptide repeat (TPR) protein
Mapman: 26.33* misc. tetratricopeptide repeat (TPR)
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G25730.4 11Arabidopsis thaliana0248496970 (0)_
AT2G25730.3 11Arabidopsis thaliana0249896960 (0)_
AT2G25730.2 11Arabidopsis thaliana0249896969 (9)_
Os01g40990.3 7Oryza sativa0225754687 (7)_
Os01g40990.2 7Oryza sativa0226354687 (7)_
Zm00001eb161040_P001 agpv5Zea mays0228552670 (0)_
Zm00001eb161040_P002 agpv5Zea mays0205552660 (0)_
GRMZM2G327311_P01 3.21Zea mays0121854671 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: TPR_2(2)
TargetP: Cytoplasm (Class 4 C0.068; M0.161; S0.030; _0.558)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 2 TMs
TAT position:
Length 2464 aa (-cTP 2386)
Molecular Weight 274.77 kDA(-cTP )
PI 5.65(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
2248Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

15276459(trichomes)
19546170(mature pollen grains)
19888209(80S polysomal fraction)
20706207(cell cycle interactome (cell culture))
21768351(Leaf-Phosphoproteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help