PPDB

 The Plant Proteome Database

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AT2G25310.1   ER membrane protein complex subunit-like protein (DUF2012)
Lab Annot. carbohydrate binding
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G32130.1 11Arabidopsis thaliana5E-10517987935 (4)S
Os06g43650.2 7Oryza sativa6E-85179678117 (17)S
Os06g43650.1 7Oryza sativa2E-7316065800 (0)S
GRMZM2G169184_P01 3.21Zea mays2E-87176718429 (29)S
v1_GRMZM2G169184_P01 4a53Zea mays2E-87176718422 (21)S
Zm00001eb275230_P001 agpv5Zea mays2E-8717671840 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CarbopepD_reg_2(1) CarboxypepD_reg(1) DUF2012(1) SOP4(3)
TargetP: Secreted (Class 1 C0.029; M0.018; S0.951; _0.031)
Predotar:
Subcel. Location:
TM-HMM prediction: 2 TMs
Aramemnon: 1 TMs
TAT position:
Length 210 aa (-cTP 180)
Molecular Weight 23.43 kDA(-cTP )
PI 8.56(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)

* For details about the exprimental sources click here.

Published Proteomics Data

 19200160(flower-stage 12)
19334764(plasma membrane (cell culture))
21173025(root proteome)
21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help