PPDB

PPDB	The Plant Proteome Database

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AT2G25140.1 casein lytic proteinase B4

Lab Annot.

ClpB4
Mapman: 29.6 protein.folding

Curated Location

mitochondria (Pubmed: 17144892 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G15450.1 11 Arabidopsis thaliana 0 896 69 83 571 (333) C
AT1G74310.1 11 Arabidopsis thaliana 0 864 48 68 120 (22) _
AT1G74310.2 11 Arabidopsis thaliana 0 827 49 69 0 (0) _
Os02g08490.1 7 Oryza sativa 0 904 77 87 4 (4) M
Os03g31300.1 7 Oryza sativa 0 901 68 83 41 (41) C
Os05g44340.1 7 Oryza sativa 0 864 49 68 0 (0) _
Zm00001eb234160_P001 agpv5 Zea mays 0 902 78 88 0 (0) M
v1_GRMZM2G060561_P02 4a53 Zea mays 0 902 78 88 12 (12) M
GRMZM2G060561_P02 3.21 Zea mays 0 902 78 88 11 (11) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA(2) AAA_14(2) AAA_16(3) AAA_18(2) AAA_2(2) AAA_22(2) AAA_23(3) AAA_24(2) AAA_
TargetP:	Mitochondria (Class 5 C0.759; M0.775; S0.002; _0.002)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	964 aa (-cTP 884)
Molecular Weight	108.66 kDA(-cTP )
PI	6.54(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
94	Detail								root [B. rapa]	plastid stroma
180_181	Detail								leaf [A. thaliana]	chloroplast stroma	clpr2-1
272	Detail								leaf [A. thaliana]	chloroplast stroma	clpr2-1
327	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
528	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt2)
873	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1125	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k2k3
1421	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1422	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1425	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 2)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1439	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 1)
1445	Detail								leaf [A. thaliana]	total tissue (3 day HL)	wild-type (rep. 1)
1446	Detail								leaf [A. thaliana]	total tissue (3 day HL)	wild-type (rep. 2)
1447	Detail								leaf [A. thaliana]	total tissue (3 day HL)	wild-type (rep. 3)
1448	Detail								leaf [A. thaliana]	total tissue (3 day HL)	abck2xabck3 (rep. 1)
1449	Detail								leaf [A. thaliana]	total tissue (3 day HL)	abck2xabck3 (rep. 2)
1450	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
2265	Detail								leaf [A. thaliana]	stroma Clp stroma	Clp C1 trap

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
18431481(chloroplast)
19546170(mature pollen grains)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21841088(mitochondria (2DE native gel))
21472856(mitochondrial-2DEgels-uncurated)

Comparative Proteomics Data