PPDB

The Plant Proteome Database

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AT2G25110.1   stromal cell-derived factor 2-like protein precursor

Lab Annot. SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR)
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os08g17680.1 7Oryza sativa1E-10921569820 (0)S
Os08g34190.1 7Oryza sativa2E-10918477890 (0)S
v1_GRMZM2G144367_P01 4a53Zea mays2E-10718475882 (2)S
Zm00001eb179820_P001 agpv5Zea mays2E-10718475880 (0)S
GRMZM2G144367_P01 3.21Zea mays2E-10718475881 (1)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Ins145_P3_rec(1) MIR(2)
TargetP: Secreted (Class 3 C0.050; M0.049; S0.784; _0.199)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 218 aa (-cTP 129)
Molecular Weight 23.93 kDA(-cTP )
PI 7.78(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

16618929(ER-LOPIT-callus)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help