PPDB

The Plant Proteome Database

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AT2G24590.1   RNA recognition motif and CCHC-type zinc finger domains containing protein

Lab Annot. splicing factor, putative
Mapman: 27.1.1 RNA.processing.splicing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G31580.1 11Arabidopsis thaliana3E-7220275814 (4)_
AT4G31580.2 11Arabidopsis thaliana3E-7220275814 (4)_
AT1G23860.2 11Arabidopsis thaliana4E-4417260661 (1)_
Os06g08840.7 7Oryza sativa8E-5720363691 (1)_
Os06g08840.1 7Oryza sativa8E-5720363691 (1)_
Os06g08840.2 7Oryza sativa8E-5720363691 (1)_
GRMZM2G151923_P04 3.21Zea mays2E-5620162701 (1)_
GRMZM2G151923_P02 3.21Zea mays2E-5620162701 (1)_
v1_GRMZM2G151923_P01 4a53Zea mays2E-5620162706 (6)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RRM_1(1) RRM_7(1) TP2(1) zf-CCHC(1)
TargetP: Cytoplasm (Class 4 C0.081; M0.404; S0.026; _0.732)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 196 aa (-cTP 184)
Molecular Weight 21.91 kDA(-cTP )
PI 11.34(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
16807317(Phosphoproteins)
18463617(suspension cells-phosphorylated proteins)
19200160(flower-stage 12)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19525416(leaf (wt and clpr4-1 mutant))
19253305(phosphoproteins (etiolated seedling))
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)

Comparative Proteomics Data


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