PPDB

 The Plant Proteome Database

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AT2G24420.1   DNA repair ATPase-like protein
Lab Annot. DNA repair ATPase-related
Mapman: 28.2 DNA.repair
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G24420.2 11Arabidopsis thaliana044010010037 (37)S
AT4G31340.1 11Arabidopsis thaliana042772838 (8)S
AT4G31340.2 11Arabidopsis thaliana040173838 (8)S
Os08g40790.2 7Oryza sativa3E-13338050718 (8)S
Os08g40790.1 7Oryza sativa7E-13338549708 (8)S
Os08g40790.3 7Oryza sativa1E-13238549718 (8)S
GRMZM2G084149_P01 3.21Zea mays4E-12739945681 (1)S
v1_GRMZM2G084149_P01 4a53Zea mays4E-12739945680 (0)S
Zm00001eb035730_P001 agpv5Zea mays4E-12739945680 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ABC_tran_Xtn(2) Apolipoprotein(2) ATG16(2) CENP-F_leu_zip(2) Crescentin(1) DUF46
TargetP: Secreted (Class 1 C0.004; M0.017; S0.992; _0.053)
Predotar:
Subcel. Location:
TM-HMM prediction: 2 TMs
Aramemnon: 1 TMs
TAT position:
Length 440 aa (-cTP 438)
Molecular Weight 50.35 kDA(-cTP )
PI 9.35(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1568Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1569Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3
1572Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1576Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1577Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1578Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1579Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1580Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1581Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1582Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1583Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1613Detail       Natural Senescence leaf [A. thaliana]  
1615Detail       Natural Senescence leaf [A. thaliana]  
1616Detail       Natural Senescence leaf [A. thaliana]  
2246Detail       seedlings [A. thaliana] total tissue gfs9
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2273Detail       seedlings [A. thaliana] total tissue wild-type
2312Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 16618929(ER-LOPIT-callus)
17151019(vacuole - suspension cell)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
20706207(contaminants cell cycle interactome (cell culture))
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)
21988472(vacuole (unfiltered data))

Comparative Proteomics Data

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