PPDB

The Plant Proteome Database

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AT2G23930.1   Putative small nuclear ribonucleoprotein G

Lab Annot. probable small nuclear ribonucleoprotein G
Mapman: 27.1 RNA.processing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G11500.1 11Arabidopsis thaliana5E-517997987 (7)_
AT3G11500.2 11Arabidopsis thaliana5E-517997980 (0)_
AT2G23930.2 11Arabidopsis thaliana5E-32541001004 (4)_
Os03g29740.1 7Oryza sativa2E-478087950 (0)_
Os07g41790.2 7Oryza sativa4E-306181915 (5)S
Os08g08040.1 7Oryza sativa6E-1272406322 (22)_
GRMZM2G083642_P02 3.21Zea mays1E-4879919613 (13)_
GRMZM2G057865_P01 3.21Zea mays2E-4879899619 (19)_
v1_GRMZM2G057865_P01 4a53Zea mays2E-4879899618 (18)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: LSM(1)
TargetP: Cytoplasm (Class 3 C0.141; M0.243; S0.100; _0.686)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 80 aa (-cTP 37)
Molecular Weight 8.84 kDA(-cTP )
PI 9.22(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1351Detail       leaf [A. thaliana] total tissue t1-t2
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
2254Detail       leaf [A. thaliana] total seedlings gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

20706207(contaminants cell cycle interactome (cell culture))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help