PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT2G23900.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G48950.1 11 Arabidopsis thaliana 0 468 75 85 0 (0) S
AT4G23500.1 11 Arabidopsis thaliana 0 435 64 79 20 (2) S
AT3G61490.4 11 Arabidopsis thaliana 0 467 59 74 0 (0) C
Os03g03350.1 7 Oryza sativa 0 426 58 75 0 (0) S
Os07g14160.1 7 Oryza sativa 6E-139 417 47 65 0 (0) S
Os03g61800.1 7 Oryza sativa 5E-135 438 47 64 0 (0) S
GRMZM2G107073_P02 3.21 Zea mays 0 443 57 73 0 (0) C
Zm00001eb268650_P003 agpv5 Zea mays 0 443 57 73 0 (0) C
v1_GRMZM2G107073_P02 4a53 Zea mays 0 443 57 73 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(1) Glyco_hydro_28(1) Pectate_lyase_3(2) Pilin(2)
TargetP:	Secreted (Class 2 C0.023; M0.021; S0.871; _0.221)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	477 aa (-cTP 448)
Molecular Weight	51.64 kDA(-cTP )
PI	8.77(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)

Comparative Proteomics Data