PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT2G22450.1 riboflavin biosynthesis protein

Lab Annot.

riboflavin biosynthesis protein, putative
Mapman: 18.3.1 Co-factor and vitamine metabolism.riboflavin.GTP cyclohydrolase II

Curated Location

plastid (Pubmed: 23198870 18431481 ) (supported by in-house exprements)

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G64300.1 11 Arabidopsis thaliana 0 469 67 79 126 (58) C
AT5G59750.1 11 Arabidopsis thaliana 2E-161 413 56 75 38 (28) M
AT5G59750.2 11 Arabidopsis thaliana 2E-154 447 52 69 30 (20) M
Os08g37605.1 7 Oryza sativa 0 416 69 82 4 (4) C
Os08g37605.2 7 Oryza sativa 0 416 69 82 4 (4) C
Os02g36340.1 7 Oryza sativa 0 396 71 84 2 (2) C
Zm00001eb182780_P004 agpv5 Zea mays 0 382 71 84 0 (0) C
Zm00001eb182780_P006 agpv5 Zea mays 0 382 71 84 0 (0) C
GRMZM2G156803_P01 3.21 Zea mays 0 382 71 84 11 (11) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DHBP_synthase(1) GTP_cyclohydro2(1)
TargetP:	Cytoplasm (Class 5 C0.232; M0.275; S0.019; _0.420)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	476 aa (-cTP 422)
Molecular Weight	52.20 kDA(-cTP )
PI	5.80(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
303	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
326	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
869	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
870	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
873	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1400	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1432	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1460	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 3)
1462	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 2)
1485	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 3)
1826	Detail								leaf tip mesophyll [Zea Mays]	chloroplast stroma	W22 (repl. 3)
1941	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1942	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1944	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1946	Detail								leaf [A. thaliana]	stroma UVR stroma	wild-type
2297	Detail								[A. thaliana]		Clp C1 WT
2311	Detail								leaf [A. thaliana]	PG plastoglobule
2316	Detail								leaf [A. thaliana]	PG plastoglobule
2317	Detail								leaf [A. thaliana]	PG plastoglobule

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data