PPDB

 The Plant Proteome Database

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AT2G21860.1   violaxanthin de-epoxidase-like protein
Lab Annot. violaxanthin de-epoxidase-related
Mapman: 16.1.4.21 secondary metabolism.isoprenoids.carotenoids.violaxanthin de-epoxidase
Curated Location plastid (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G08550.2 11Arabidopsis thaliana2E-081612040184 (139)_
AT1G08550.3 11Arabidopsis thaliana2E-0816120400 (0)_
AT1G08550.1 11Arabidopsis thaliana2E-081612040184 (139)_
Os01g51860.1 7Oryza sativa045466796 (6)C
Os04g31040.3 7Oryza sativa6E-11281233610 (10)S
Os04g31040.1 7Oryza sativa1E-10281233610 (10)M
Zm00001eb361490_P001 agpv5Zea mays045865790 (0)C
Zm00001eb361490_P002 agpv5Zea mays045865790 (0)C
v1_GRMZM2G408706_P04 4a53Zea mays045865790 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DdrB(2) DUF3479(1) VDE(1)
TargetP: Chloroplast (Class 3 C0.681; M0.103; S0.020; _0.153)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 522 aa (-cTP 465)
Molecular Weight 59.29 kDA(-cTP 52.85)
PI 6.50(-cTP 5.54)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1675Detail       Rosettes [A. thaliana]  
1676Detail       Rosettes [A. thaliana]  
1678Detail       Rosettes [A. thaliana]  
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2288Detail        [A. thaliana] Clp C1 WT
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2298Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2302Detail        [A. thaliana] Clp C1 WT
2303Detail        [A. thaliana] Clp C1 WT
2304Detail        [A. thaliana] Clp C1 WT
2317Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

 21515685(GreenCut2)

Comparative Proteomics Data

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