PPDB

 The Plant Proteome Database

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AT2G20920.1   chaperone (DUF3353)
Lab Annot. weak homolog of CDF1
Mapman: 35.2 not assigned.unknown
Curated Location plastid (Pubmed: 23198870 19224954 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G23040.1 11Arabidopsis thaliana4E-09191274255 (42)C
AT5G23040.2 11Arabidopsis thaliana4E-0919127420 (0)C
AT3G51140.1 11Arabidopsis thaliana5E-072272645104 (101)C
Os03g04440.1 7Oryza sativa4E-10325861742 (2)C
Os03g04440.2 7Oryza sativa2E-6920058721 (1)C
Os08g32130.2 7Oryza sativa7E-0618625410 (0)M
AC155624.2_FGP011 3.21Zea mays2E-10224564765 (5)C
Zm00001eb003030_P001 agpv5Zea mays2E-10224564760 (0)C
v1_AC155624.2_FGP011 4a53Zea mays2E-10224564764 (4)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CPP1-like(2)
TargetP: Chloroplast (Class 2 C0.877; M0.275; S0.003; _0.036)
Predotar:
Subcel. Location: Thylakoid membrane
TM-HMM prediction: 2 TMs
Aramemnon: 4 TMs
TAT position:
Length 287 aa (-cTP 228) (-lTP 172)
Molecular Weight 30.48 kDA(-cTP 23.96)(-lTP 18.08)
PI 9.63(-cTP 6.97)(-lTP 9.074)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1348Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 1)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
1450Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1650Detail       leaf [A. thaliana] plastoglobules plastoglobulem48
1678Detail       Rosettes [A. thaliana]  
1936Detail       leaf [A. thaliana] chloroplast Prep1_Prep2

* For details about the exprimental sources click here.

Published Proteomics Data

 17432890(leaf total membranes)
19525416(leaf (wt and clpr4-1 mutant))
21515685(GreenCut2)

Comparative Proteomics Data

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