PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT2G20490.1 nucleolar RNA-binding Nop10p family protein

Lab Annot.

RNA binding - EDA27/NOP10 (embryo sac development arrest 27)
Mapman: 27.4 RNA.RNA binding

Curated Location

nucleus (Pubmed: 15133128 )

TAIR curated location: nucleolus & Cajal body15133128

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G20490.3 11 Arabidopsis thaliana 2E-42 64 100 100 0 (0) _
AT2G20490.2 11 Arabidopsis thaliana 4E-40 64 98 98 24 (16) _
Os02g40514.2 7 Oryza sativa 3E-32 64 81 89 0 (0) _
Os02g40514.1 7 Oryza sativa 3E-32 64 81 89 0 (0) _
v1_GRMZM2G153227_P01 4a53 Zea mays 2E-33 64 82 90 14 (14) _
GRMZM2G153227_P01 3.21 Zea mays 2E-33 64 82 90 14 (14) _
v1_GRMZM2G133838_P01 4a53 Zea mays 4E-33 59 88 94 17 (17) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Nop10p(1)
TargetP:	Cytoplasm (Class 2 C0.126; M0.176; S0.112; _0.839)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	64 aa (-cTP 58)
Molecular Weight	7.39 kDA(-cTP )
PI	9.52(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1356	Detail								leaf [A. thaliana]	total tissue - low mass region	wild-type
1357	Detail								leaf [A. thaliana]	total tissue - low mass region	clpt1xclpt2
1394	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1395	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1396	Detail								leaf [A. thaliana]	total leaf tissue	clpt1xclpt2 (rep. 2)
1405	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1406	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1427	Detail								[A. thaliana]	total leaf tissue 1.11	wild-type
1428	Detail								[A. thaliana]	total leaf tissue 1.11	Prep1_Prep2_t1_t2
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1496	Detail								leaf [A. thaliana]		Prep1_Prep2_t1_t2

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
19334764(plasma membrane (cell culture))
19714877(interactomes 14-3-3 complexes (cell culture))
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data