PPDB

 The Plant Proteome Database

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AT2G20190.1   CLIP-associated protein
Lab Annot. ATCLASP/CLASP; binding
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os04g42840.1 7Oryza sativa01450637819 (19)_
Os02g40430.1 7Oryza sativa01191597311 (11)_
Os02g57120.3 7Oryza sativa4E-15169041606 (6)M
Zm00001eb426220_P003 agpv5Zea mays0144762780 (0)_
Zm00001eb077900_P002 agpv5Zea mays0144762770 (0)_
GRMZM2G052078_P02 3.21Zea mays01447627716 (5)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Adaptin_N(5) CLASP_N(5) Cnd1(6) Dopey_N(4) DUF1981(2) DUF3361(3) Ecm29(5) HEAT(7
TargetP: Cytoplasm (Class 2 C0.134; M0.088; S0.008; _0.857)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 2 TMs
TAT position:
Length 1439 aa (-cTP 1372)
Molecular Weight 158.95 kDA(-cTP )
PI 6.72(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2246Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2252Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

 17317660(Plasma Membrane proteome)
18463617(suspension cells-phosphorylated proteins)
19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
22060019(phosphoproteome - N-starved seedlings)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help