PPDB

The Plant Proteome Database

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AT2G20180.2   phytochrome interacting factor 3-like 5

Lab Annot. PIF1 - phytochrome-interacting factor 1 (dual nucleus/cytosol)
Mapman: 27.3.6 RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family
Curated Location cytosol (Pubmed: 15448264 )
nucleus (Pubmed: 15448264 )

TAIR curated location: nucleus15486102,16359394
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G20180.4 11Arabidopsis thaliana04781001000 (0)_
AT2G20180.6 11Arabidopsis thaliana04781001000 (0)_
AT2G20180.3 11Arabidopsis thaliana04781001000 (0)_
Os03g56950.7 7Oryza sativa9E-4115351670 (0)_
Os03g56950.3 7Oryza sativa9E-4115351670 (0)_
Os03g56950.4 7Oryza sativa9E-4115351670 (0)_
Zm00001eb059460_P005 agpv5Zea mays2E-4135934470 (0)_
Zm00001eb050790_P002 agpv5Zea mays4E-4024442570 (0)_
Zm00001eb050790_P003 agpv5Zea mays5E-4024442570 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: FAM176(1) HLH(1) SpoIIIAH(1) Tom22(1)
TargetP: Cytoplasm (Class 2 C0.228; M0.042; S0.052; _0.916)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 478 aa (-cTP 408)
Molecular Weight 52.86 kDA(-cTP )
PI 6.25(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


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