PPDB

 The Plant Proteome Database

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AT2G20020.1   RNA-binding CRS1 / YhbY (CRM) domain-containing protein
Lab Annot. CAF1 - splice factor group II intron
Mapman: 27.1.1 RNA.processing.splicing
Curated Location plastid (Pubmed: 23198870 17071648 18431481 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G23400.1 11Arabidopsis thaliana4E-14236955732 (2)C
AT4G31010.1 11Arabidopsis thaliana2E-8631545630 (0)M
AT4G31010.2 11Arabidopsis thaliana5E-8432244620 (0)M
Os01g31110.1 7Oryza sativa1E-16638462751 (1)C
Os01g21990.1 7Oryza sativa3E-12633154732 (2)C
Os08g07790.1 7Oryza sativa3E-9230649660 (0)M
Zm00001eb306430_P001 agpv5Zea mays1E-17062445600 (0)C
Zm00001eb130860_P001 agpv5Zea mays2E-12433154720 (0)C
AC199526.5_FGP003 3.21Zea mays2E-124331547234 (34)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CRS1_YhbY(2)
TargetP: Chloroplast (Class 2 C0.820; M0.171; S0.004; _0.105)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 701 aa (-cTP 664)
Molecular Weight 79.05 kDA(-cTP 74.85)
PI 8.73(-cTP 8.46)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1672Detail        [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
20423899(chloroplast)

Comparative Proteomics Data

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