PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G19920.1   RNA-dependent RNA polymerase family protein
Lab Annot.
Mapman: 27.2 RNA.transcription
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G19920.2 11Arabidopsis thaliana092799990 (0)M
AT2G19920.4 11Arabidopsis thaliana092799990 (0)_
AT2G19920.3 11Arabidopsis thaliana092799990 (0)_
Os01g10140.2 7Oryza sativa1E-12953942600 (0)_
Os01g10140.3 7Oryza sativa3E-10744542600 (0)M
Os01g10130.1 7Oryza sativa2E-9839044650 (0)_
Zm00001eb088530_P002 agpv5Zea mays2E-7637742580 (0)_
GRMZM2G327247_P01 3.21Zea mays4E-7541738560 (0)_
AC217553.3_FGP008 3.21Zea mays8E-3218344570 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: PITH(3) RdRP(1)
TargetP: Cytoplasm (Class 2 C0.105; M0.128; S0.018; _0.851)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 927 aa (-cTP 900)
Molecular Weight 105.18 kDA(-cTP )
PI 6.79(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1202Detail       leaf [A. thaliana] total leaf tissue clpp3 null

* For details about the exprimental sources click here.

Published Proteomics Data

 21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help