PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT2G19570.1 cytidine deaminase 1

Lab Annot.

cytidine deaminase 1
Mapman: 23.2 nucleotide metabolism.degradation

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G29610.1 11 Arabidopsis thaliana 2E-111 293 56 67 7 (4) _
AT4G29600.1 11 Arabidopsis thaliana 7E-101 308 53 66 0 (0) _
AT4G29620.1 11 Arabidopsis thaliana 8E-86 306 49 63 0 (0) _
Os01g51540.1 7 Oryza sativa 4E-70 295 49 64 12 (12) _
Os06g40910.1 7 Oryza sativa 4E-43 197 48 60 0 (0) M
Zm00001eb361370_P001 agpv5 Zea mays 7E-77 295 49 64 0 (0) _
Zm00001eb155060_P001 agpv5 Zea mays 2E-75 278 51 64 0 (0) _
v1_GRMZM2G380088_P01 4a53 Zea mays 2E-75 278 51 64 1 (1) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	dCMP_cyt_deam_1(3) dCMP_cyt_deam_2(2) OTT_1508_deam(2)
TargetP:	Cytoplasm (Class 4 C0.300; M0.025; S0.015; _0.658)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	301 aa (-cTP 251)
Molecular Weight	32.58 kDA(-cTP )
PI	5.52(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1440	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 2)
1444	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
1540	Detail								leaf [A. thaliana]	Thylakoids plastoglobule	wild-type
1541	Detail								leaf [A. thaliana]	Thylakoids plastoglobule	M-48
2006	Detail								leaf [A. thaliana]	over expressed M48 plastoglobule	M48

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
20118269(developing seeds)
20405473(roots - TRX-y interacting proteins)
19888209(leaves)
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
21515685(GreenCut2)

Comparative Proteomics Data