PPDB

 The Plant Proteome Database

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AT2G19520.1   Transducin family protein / WD-40 repeat family protein
Lab Annot. Transducin protein / WD-40 repeat protein
Mapman: 33.99 development.unspecified
Curated Location
TAIR curated location: nucleus & cytoplasm15610358
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G29730.1 11Arabidopsis thaliana051075820 (0)C
AT4G29730.3 11Arabidopsis thaliana044574810 (0)C
AT4G29730.2 11Arabidopsis thaliana044574810 (0)C
Os01g51300.2 7Oryza sativa0458758516 (16)_
Os01g51300.1 7Oryza sativa0467748311 (11)_
Os03g43890.1 7Oryza sativa5E-6543833492 (2)_
v1_GRMZM2G137965_P01 4a53Zea mays0457778718 (18)_
GRMZM2G137965_P01 3.21Zea mays0457778711 (7)_
GRMZM2G316113_P02 3.21Zea mays0457697914 (7)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ANAPC4_WD40(2) CAF1C_H4-bd(2) Ice_binding(1) WD40(6)
TargetP: Cytoplasm (Class 4 C0.453; M0.088; S0.057; _0.784)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 507 aa (-cTP 444)
Molecular Weight 55.76 kDA(-cTP )
PI 5.81(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1544Detail       leaf [A. thaliana] TiO2 thylakoid membranek1xk3
1621Detail        [A. thaliana] m48
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2043Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2044Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2048Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2052Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2214Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2215Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st
2216Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2217Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st
2218Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2220Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2225Detail       leaf [A. thaliana] total leaf tissue Clp P3 trap
2252Detail       seedlings [A. thaliana] total tissue gfs9
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

 15496452(nucleolus)
19200160(flower-stage 12)
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help