PPDB

PPDB	The Plant Proteome Database

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AT2G18940.1 Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot.

maize orthologue of pentatricopeptide repeat 10 (PPR10) - binds to atpH and psaJ
Mapman: 27.4 RNA.RNA binding

Curated Location

plastid nucleoid (Pubmed: 23198870 19424177 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G02860.1 11 Arabidopsis thaliana 0 682 40 61 0 (0) C
AT5G02860.5 11 Arabidopsis thaliana 0 682 40 61 0 (0) C
AT5G02860.3 11 Arabidopsis thaliana 0 682 40 61 0 (0) C
Os05g19380.1 7 Oryza sativa 0 709 55 72 16 (16) C
Os07g40120.1 7 Oryza sativa 1E-166 641 39 60 0 (0) C
Os07g14530.3 7 Oryza sativa 7E-67 635 25 47 0 (0) C
GRMZM2G177169_P01 3.21 Zea mays 0 704 55 72 57 (39) C
v1_GRMZM2G177169_P01 4a53 Zea mays 0 704 55 72 27 (27) C
Zm00001eb274840_P001 agpv5 Zea mays 0 704 55 72 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ATP13(3) BTAD(3) Clathrin(4) DUF2095(3) ECSIT(6) FluMu_N(1) MRP-S27(4) Mtf2(4) P
TargetP:	Chloroplast (Class 1 C0.972; M0.017; S0.001; _0.153)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	822 aa (-cTP 745)
Molecular Weight	92.24 kDA(-cTP 83.89)
PI	8.36(-cTP 8.06)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data