PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT2G18790.1 phytochrome B

Lab Annot.

phytochrome B
Mapman: 30.11 signalling.light

Curated Location

TAIR curated location: nucleus15823535,10225946

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G18790.2 11 Arabidopsis thaliana 0 1088 100 100 0 (0) C
AT4G16250.1 11 Arabidopsis thaliana 0 1163 81 88 0 (0) C
AT4G18130.1 11 Arabidopsis thaliana 0 1130 56 73 0 (0) _
Os03g19590.1 7 Oryza sativa 0 1128 74 85 0 (0) M
Os03g54084.1 7 Oryza sativa 0 1127 52 70 0 (0) M
Os03g51030.1 7 Oryza sativa 0 1109 50 68 0 (0) M
Zm00001eb014850_P001 agpv5 Zea mays 0 1111 75 86 0 (0) C
GRMZM2G124532_P03 3.21 Zea mays 0 1111 75 86 4 (3) C
GRMZM2G092174_P01 3.21 Zea mays 0 1114 73 85 1 (1) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	GAF(2) HATPase_c(1) HisKA(1) PAS(3) PAS_2(1) PAS_3(2) PAS_4(2) PAS_8(2) PAS_9(3)
TargetP:	Chloroplast (Class 5 C0.676; M0.052; S0.010; _0.624)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1172 aa (-cTP 1124)
Molecular Weight	129.33 kDA(-cTP 124.62)
PI	5.62(-cTP 5.47)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)

Comparative Proteomics Data